Vjylku

In my python script based on Qgis 3.0.3-Girona, the processing.run() is completely ignored. There are similar questions that are marked as duplicate - but those do not address or solve the issue that I list here. Here is my script.... *

from qgis.core import (

     QgsApplication, 

     QgsProcessingFeedback, 

     QgsVectorLayer

)

from qgis.core import QgsApplication

# See https://gis.stackexchange.com/a/155852/4972 for details about the prefix 

QgsApplication.setPrefixPath('e:/Qgis3/apps/qgis', True)

qgs = QgsApplication([], False)

qgs.initQgis()

# Append the path where processing plugin can be found

sys.path.append('e:\QGIS3\apps\qgis\qtplugins')

sys.path.append('e:\QGIS3\apps/Qt5\plugins')

sys.path.append('e:\QGIS3\apps\qgis\python\plugins')

sys.path.append("e:\QGIS3\apps\Python36\Lib\site-packages")

from processing.core.Processing import Processing

Processing.initialize()

print("Finished importing")

params = { 

    'INPUT_RASTER':'E:\arp\LEAP\s823_actfilt.tif',

    'RASTER_BAND':1,

    'INPUT_VECTOR':'E:\arp\LEAP\test.shp',

    'COLUMN_PREFIX':'actfilt_',

    'STATS':[0,1,2],

}

feedback = QgsProcessingFeedback()

print("Starting zonalstats")

processing.run("qgis:zonalstatistics", params,feedback)

print("Finished zonalstats")

*
The output prints "Starting zonalstats" ; "Finished importing" but never prints "Finished zonalstats". I tried several combinations including capturing the output to res variable etc. (as explained in other similar posts) but none of them work - the processing.run() is simply ignored. Not sure if it is a bug or something I'm doing wrong.

Well, the issue turned out to be a minor one. I had failed to include "import processing". I post below the code that works. Also note that QGIS3 is rather quirky about the paths - the ones recommended in the documentation is not sufficient...hence my code goes overboard in including all - and hence it works. Also make sure you run the file with python3 (the default python is still python 2.7.5 in Qgis3). Hope this helps some who want to run standalone pyQGIS scripts in Qgis 3.

import sys, os

cwd = os.getcwd().replace("\","/")



InVecFile = cwd+"/"+sys.argv[1] # Input vector/polygon file

InRasFile = cwd+"/"+sys.argv[2] # Input raster file

inx = sys.argv[2].split(".")

InPrefix = inx[0]+"_"



if len(sys.argv) < 2:

   print("USAGE: qgis3_ZonalStats.py <InVecFile> <InRasFile>")

   sys.exit()



from qgis.core import (

     QgsApplication, 

     QgsProcessingFeedback, 

     QgsVectorLayer

)



from qgis.core import QgsApplication



# See https://gis.stackexchange.com/a/155852/4972 for details about the prefix 

QgsApplication.setPrefixPath('e:/Qgis3/apps/qgis', True)

qgs = QgsApplication([], False, None)

qgs.initQgis()



# Append the path where processing plugin can be found

sys.path.append('e:\QGIS3\apps\qgis\qtplugins')

sys.path.append('e:\QGIS3\apps/Qt5\plugins')

sys.path.append('e:\QGIS3\apps\qgis\python')

sys.path.append('e:\QGIS3\apps\qgis\python\plugins')

sys.path.append('E:\Qgis3\apps\Python36\DLLs')

sys.path.append('E:\Qgis3\apps\Python36\lib')

sys.path.append('E:\Qgis3\apps\Python36\lib\site-packages\win32')

sys.path.append('E:\Qgis3\apps\Python36\lib\site-packages\win32\lib')

sys.path.append('E:\Qgis3\apps\Python36\lib\site-packages\Pythonwin')

sys.path.append("e:\QGIS3\apps\Python36\Lib\site-packages")

# Append location of DLLs to current system PATH envrionment variable

# os.environ['PATH'] += r";C:Program FilesQGIS 2.14appsqgis-ltrbin;"



import processing

from processing.core.Processing import Processing

Processing.initialize()

print("Finished importing")



# You can see what parameters are needed by the algorithm  

# using: processing.algorithmHelp("qgis:union")

params = { 

    'INPUT_RASTER':InRasFile,

    'RASTER_BAND':1,

    'INPUT_VECTOR':InVecFile,

    'COLUMN_PREFIX':InPrefix,

    'STATS':[0,1,2],

}

feedback = QgsProcessingFeedback()

print("Starting zonalstats")

processing.run("qgis:zonalstatistics", params)

QgsApplication.exitQgis()

app.exit()